Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The detailed information about mr1634 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg0406868619 sf0406864064 4 6868619 2.64E-08 1.67E-06
vg1002941211 sf1002940188 10 2941211 4.90E-08 3.30E-07
vg0114113018 sf0114111992 1 14113018 4.86E-07 1.75E-06
vg0519102583 sf0519040067 5 19102583 2.77E-06 NA
vg1201093266 sf1201092266 12 1093266 7.01E-06 NA